Konrad Scherer

Dell R720 Server install

Got a brand new Dell R720 server to install recently. The task sounded simple enough: Install CentOS 6.3 x86_64 on the machine as quickly as possible. The configuration of the server included 6 2TB drives which will be used to store the code that will be shipped to the customer, so RAID0 is not a good choice. A good place to start would be the RAID configuration.

The server comes with iDRAC7 and it allows me to connect to the server which was physically located over 3000km away. Linux and the iDRAC6 version of the VNC viewer did not work with arrow keys. A crazy hack was necessary. It is described in detail here: https://github.com/pjr/keycode-idrac. This was fixed with iDRAC7. Progress!

Out of the box, Dell grouped the 6 disks into a RAID5 disk group, but on top of that were 5 2TB and 1 80GB virtual disks on this disk group. Further research shows that the BIOS cannot boot partitions larger that 2TB and that many older file systems cannot handle disks larger than 2TB. But newer technologies like GPT and ext4 can handle theoretically handle this. Let’s give it a whirl.

In the RAID controller BIOS, the 6 virtual disks are deleted and one massive 9TB disk is created. This disk will need to be booted using UEFI.

Next step, go into the system setup. The BIOS now uses the latest UEFI and the arrow key that worked in the text mode bios now no longer work. However after pressing the Num Lock key, the UEFI options can be navigated using the keyboard. This is very annoying, but workable.

Under Boot Setting the boot system is switched to UEFI. To install CentOS from CD, the virtual media option on the iDRAC uses a special USB device to attaches the CentOS 6.3 install iso as CD on the server. After waiting almost 5 minutes for the server to reboot, the UEFI boot from Virtual CD fails. Oh well back to the old BIOS booting.

This means a smaller boot disk will be necessary. Back into the RAID controller BIOS, delete the single disk and recreate one 500GB disk and a larger 8.5TB disk. This time, the Virtual CD is found and the install proceeds as usual.

But upon reboot, the system hangs and the system does not boot! I use the CentOS netinstall CD as rescue to find out that the kickstart decided to install into the large data drive, that the BIOS cannot boot! To tell kickstart to ignore the large data drive it was necessary to add:

ignoredisk --drives=/dev/disk/by-path/pci-0000:03:00.0-scsi-0:2:1*

to the partition information in the kickstart and reinstall. This time the install is successful and the server reboots into CentOS 6.3 and puppet does the base configuration.

Next step is to prepare the large data drive to hold the data. One of the irritations of using ext and many other filesystems is that fsck is only possible when the disk is offline. For servers, this means that fsck never gets run. Occasionally the server is rebooted and an fsck is started. But this is usually the worst possible time to do it. The result is that fsck is completely disabled and fingers are crossed. One potential solution is e2croncheck.

It uses lvm read only snapshots to run fsck on a disk without making it necessary to take the disk offline. There are a couple caveats of course:

  • There is a performance impact of running fsck on a disk
  • The disk must obviously be on an lvm partition
  • There must be free space in the volume group to hold any writes that are done while the snapshot is active

With this and alignment issues in mind, the following commands were used to create the lvm and ext4 partition:

parted -s /dev/sdb mklabel gpt
parted -s /dev/sdb mkpart data ext2 1M 100%
pvcreate --dataalignment=1M -M2 /dev/sdb1
vgcreate vg /dev/sdb1
lvcreate -L 8T -n git vg
mkfs.ext4 -m 0 -E stride=16,stripe_width=80 /dev/mapper/vg-git

The RAID controller uses 64Kb block size, so I use a partition offset and a data alignment of 1Mb to ensure all blocks line up on boundaries. To help ext4 work within the RAID effectively, stride=4K*16=64K and stripe_width=(6 disks - 1 parity = 5) * 16.

The server is now finally ready to be used.

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